Selected publications:
Estacio-Gómez, A. Hassan, A. Walmsley, EL. Le, LW and Southall TD. (2019) Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development BiorXiv Preprint (PDF)
Aughey, GN., Estacio-Gomez, A., Thomson, J., Yin, H. and Southall, TD. (2018) CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo. eLife eLife 2018;7:e32341 doi: 10.7554/eLife.32341 (PDF)
Marshall, O., Southall, T.D., Cheetham, S.W. and Brand, A.H. (2016) Cell-type-specific profiling of protein-DNA interactions without cell isolation using targeted DamID with next-generation sequencing. Nat Protoc 2016 Sep;11(9):1586-98. doi: 10.1038/nprot.2016.084. Epub 2016 Aug 4. (PDF)
Southall, T.D., Davidson, C.M., Miller, C., Carr, A. and Brand, A.H. (2014) Dedifferentiation of neurons precedes tumour formation in lola mutants. Dev Cell 2014 March 10.1016/j.devcel.2014.01.030 (PDF) Faculty of 1000 recommended - f1000
Southall, T.D., Gold, K.S., Egger, B., Davidson, C.M., Caygill, E.E., Marshall. O.J. and Brand, A.H. (2013) Cell type-specific profiling of gene expression and chromatin binding without cell isolation: Assaying RNA Pol II occupancy in neural stem cells. Dev Cell 2013 July 15; 26(1): 101–112. (PDF)
Wolfram, V., Southall, T.D., Brand, A.H. and Baines, R.A. (2012) Islet regulates predetermination of K+ channel expression in Drosophila embryonic motoneurons. Neuron 2012 Aug: 75(4): 663-674. (PDF)
Southall,T.D. and Brand, A.H. (2009). Neural stem cell transcriptional networks highlight genes essential for nervous system development. EMBO J. 2009 Dec 16;28(24):3799-807. (PDF)
Choksi, S.*, Southall, T.D.*, Bossing, T., de Wit, E., van Steensel, B., Micklem, G. and Brand, A.H. (2006) Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells. Dev Cell Dec;11(6):775-89. (PDF)
* - equal contribution
All Southall publications (Pubmed)
Review Articles:
Aughey, G.N., Cheetham, S., and Southall T.D. (2019) DamID as a versatile tool for understanding gene regulation. Development. 146, dev173666. doi:10.1242/dev.173666 (PDF)
Aughey, G.N. and Southall, T.D. (2016). Dam it's good! DamID profiling of protein-DNA interactions. WIREs Dev Biol 2016, 5:25–37. doi: 10.1002/wdev.205
McClure, C.D. and Southall, T.D. (2015) Getting Down to Specifics: Profiling Gene Expression and Protein-DNA Interactions in a Cell Type-Specific Manner. Adv Genet 2015;91:103-51 (Pubmed) Open access PMC version